COVID-19: The Latest Information from UPMC
Children's Hospital is part of the UPMC family.
Be safe anytime, anywhere.
To find a pediatrician or pediatric specialist, please call 412-692-7337 or search our directory.
A resource for our network of referring physicians.
For more information about research, please call our main office at 412-692-6438.
Ranked #8 Nationally by U.S. News & World Report.
John Alcorn, PhD is a scientist at UPMC Children's Hospital of Pittsburgh and an associate professor in the University of Pittsburgh School of Medicine. The Alcorn lab is focused on T cell immunity, host defense, epithelial cell biology, and lung physiology. A primary lab focus is on Influenza infection and the host defense mechanisms of T helper 17 cells. His lab has recently shown that the TH17 effector cytokines IL-17 and IL-22 are required for host defense against a variety of extracellular pathogens.
View the transcript for this podcast (PDF)
Steph Dewar: This podcast is for informational and educational purposes only, and is not to be
considered medical advice for any particular patient. Clinicians must rely on
their own informed clinical judgments when making recommendations for their
patients. Patients in need of medical advice should consult their personal
From UPMC Children's Hospital of Pittsburgh, welcome to That's Pediatrics. I'm
one of your co-hosts, Steph Dewar, Vice Chair of Clinical Affairs and Residency
John Williams: And I'm your other co-host, John Williams, Division Chief of Pediatric Infectious
Diseases, and I'm delighted to welcome our guest today, Dr. John Alcorn. Dr.
Alcorn is an associate professor in the Department of Pediatrics in the division
of Pulmonary Medicine at UPMC Children's Hospital of Pittsburgh. John is a
basic scientist, and his laboratory focuses on T cell immunity, host defense,
epithelial cell biology, and lung physiology. They have a primary focus that I
think we'll hear about on influenza infection and host defense mechanisms of
helper T cells called Th17 cells. John, welcome to That's Pediatrics.
John Alcorn: Oh, thank you for having me.
John Williams: So, I did want to first start to hear about a little bit of maybe a broad overview
of your research, and specifically these Th17 cells, which probably not all of our
listeners know a lot about.
John Alcorn: Sure. So, I've been working in lung immunology for about the last 20 years in my
career, and this has kind of spanned both chronic and acute illness over the
years. I think, for me, I started off working in the cystic fibrosis field, which is a
very common problem in children, and eventually worked in asthma for several
years of my training as well. The common link between these diseases is that a
lot of the lung injury or the pathology that occurs is driven by T cell mediated
So, the focus in the last 10 years since I've come to Children's has really been on
this new subset of T cells, type 17, or Th17 cells, that were identified first in
2006 and 2007. So, this is a new player. We really just reached the textbooks. I
actually was just looking through a recent The Abbas Immunology that the med
students use, and there actually are Th17 cells in the book now, which is an
improvement over where it had been.
But, essentially, what was missing from the textbook with the Th1s or Th2
paradigm of T cell mediated biology was the subset that mediated both host
defense against extra cellular pathogens, so we're talking about things like
bacteria and fungi, things that are outside the cell, and cells that may, then,
mediate chronic inflammation in terms of auto-immune disorders, things like
psoriasis or asthma that we were interested in.
So, that was really the starting point for me, was to try to understand the role of
these new cells, these new type 17 cells. They're named ... I guess I should
introduce why they're called 17 cells. They're type 17 cells because they make
IL-17 as their primary cytokine. It wasn't because we couldn't count Th1, Th2,
Th3. But, essentially, that's what they are. They're the third subset.
These cells, as we knew at the time about a decade ago, this cytokine, IL-17, is
important in driving inflammation in many settings. It drives neutrophilic
inflammation, which is common to not just infection settings, but also these
auto-inflammatory disorders. What was known in asthma for quite a long time
was that a large subset of severe asthmatics don't present with typical type 2
inflammation or eosinophilic inflammation, and these asthmatics generally were
categorized as non-Th2, and that was kind of still where we're at right now. We
don't have a good way to evaluate biomarkers in those patients if they don't
have high type 2 disease.
So, what was known is that if you looked at IL-17 levels in some of those
patients, that high levels of IL-17 were correlated with worse disease, worse
neutrophilic inflammation, lack of steroid responsiveness. That's actually what I
was initially recruited here to Children's Hospital to work on, was to develop
animal models to better test the function of these type 17 immune cells and
whether or not these might be playing a role in severe asthma.
John Williams: So, that's really interesting. I mean, obviously, asthma has been known for a
long time, and in pediatrics it's the most common chronic disease, and
something that we see all the time in the hospital, yet it sounds like what you're
describing is a large chunk of these patients that had these cells that were
unknown that are major contributors to the disease and that we're still trying to
figure that out.
John Alcorn: Yeah, I think that's absolutely true. The large subset of non-type 2 asthmatics is
fairly broad. Some of those patients will have this IL-17 signature, or this
neutrophilic signature. That can be identified by looking at cytokines in their
sputum or looking at biopsy samples or RNA transcriptional profiles. However,
that's not all of these non-type 2 asthmatics. There's several asthmatics that
have high signatures of type 1 cytokines, things like interferon gamma, that may
be a holdover from viral exacerbation of asthma or something along those lines.
We don't really know.
One of the problems we've had with identifying these type 17 patients is the
lack of a biomarker that sufficiently would capture them. With the type 2
asthmatics in the recent years, in the last five or six years, periostin has evolved
as a blood biomarker to quickly identify a high type 2 asthmatic. That, then,
allows you to customize your therapy towards that asthmatic fairly quickly with
anti-IL-13 or anti-IL-4 or anti-IL-5 biologics that target those type 2 cytokines.
With type 17, we just don't have that.
Oddly enough, IL-17, even though it may be a driver of a lot of this disease,
there isn't really a good signature of IL-17 in the blood during these processes,
so you have to look for kind of the impact of IL-17 being there, cytokines or
chemokines involved with neutrophilia usually is what you're looking for. But,
yeah, we struggle in that area.
Steph Dewar: So, it's interesting, as somebody who went to medical school perhaps in the 80s
when we knew way less about immunology, I'm curious, are these those
patients, those patients with asthma, who were chronically on systemic steroids
or what have you? We just didn't have what it took to keep them well.
John Alcorn: Right, at least in our hands, when we look at samples from the Severe Asthma
Research Program that have been collected here at the University of Pittsburgh,
a lot of those asthmatics, the asthmatics with the high neutrophilia, low type 2
signature in terms of their sputum, just by looking at what cells are there. Those
asthmatics tend to be the highest users of systemic steroids, not to the level of
where we could significantly say that that's the case, but it seems to be the
trend, that perhaps the worst responders are in this class.
But, like I said, it might very well be that we can't always detect these patients,
anyway, because we don't have a good marker to find them, and even when we
look at the sputum type cytokine profiles, you find a lot of severe asthmatics in
a bucket where they don't really have type 2 or type 17 markers. So, it's hard to
sort those out as well.
Steph Dewar: I'm just wondering what the availability of those alternative therapies are that
John Alcorn: Yeah, so, there has been a single clinical trial with an anti-IL-17 receptor
antibody in asthma that was performed by Amgen about 5 years ago. Part of the
problems with that trial ... So, the trial was not successful. The study didn't find
a benefit. However, it was targeted to mild and moderate asthmatics more than
severe, largely because we were still trying to figure out these endotypes or
these different subsets of asthmatics.
So, I'm not entirely sure the book is closed on IL-17 in disease. What we do
know is, from other types of diseases, autoimmune disorders, the drugs against
anti-IL-17, anti-IL-23, another cytokine involved in the pathway, are to market
already for things like psoriasis and rheumatoid arthritis and other diseases in
that area. Yeah.
John Williams: So, John, you started in asthma, and you've worked in that for a long time, and
that's how you got into these Th17 cells, but since your lab is near ours, and, in
fact, your lab has been very helpful to people in my lab, I'm aware that now you
study influenza and bacterial infection. How did you make that transition?
John Alcorn: Yeah, how did I make the jump? So, the first 10 years of my career was very
much chronic illness, and what really struck me and has kind of held me my
entire career, why I work in the lung, is this idea that the lung has a surface area
the size of a tennis court, and we breathe probably 25 thousand breaths a day
of air in and out, and this idea of barrier immunity which is now kind of called
mucosal immunity, has always intrigued me.
For me, chronic disease always holds a place of interest, but the idea that your
child could be well one day, and in 48 end up in the ICU, really has invoked a
passion in me. When I came here to Children's, that was my goal, was to start to
study some more acute models. In fairness, there was always a little bit of luck
in where you end up in this career, and honestly I started working in influenza in
late 2008. We started working in our own models of secondary infections, with
bacterial infections or complications in pneumonia about a month before the
pandemic in 2009.
So, there was certainly a little bit of right place, right time, involved in working
on flu. But flu's always fascinated me, because there really isn't anything that
we have in the toolbox to treat these patients other than supportive care. We
have antivirals that only work very early during infection, and often the horse is
already out of the barn by the time you would come to the ED. So, there
seemed to be a large unmet need, and that's how I got into the field initially,
and where we've been really for the last 10 years, built the lab around.
John Williams: Yeah, it's really true. Although, I'll note that the CDC recommendations are that
any hospitalized patient with influenza should get treated, the evidence for
benefit beyond the first 72 hours is not very good. So, what are the things that
you're learning using your laboratory and animal models?
John Alcorn: Right, so, I think with flu, and this is not unlike some other viral illnesses, that a
lot of the pathology is host-mediated, meaning that people don't generally die
of a viral infection or the viremia caused by flu. You don't end up with flu
systemically. Generally it's restricted to the lung, and cell death caused by the
virus is generally restricted to areas of the lung.
What generally happens is something called cytokine storm, it's been kind of a
buzz term for this, where the host immune response becomes aberrant or overactivated. That over-activation, then, leads the increased fluid accumulation,
increased cellular accumulation, and eventually more tissue damage, and that's
what leads to the need for supportive care.
I think what we've found quite a bit is that there are ways to modulate that
immune response, and this is kind of the hot area in a lot of diseases right now,
is this kind of biologic immunomodulation therapy. There might be ways where
we can tune back some of that inflammation and not really compromise the
clearance of the virus. You need cells like CD8 T cells, for example, to kill a virus,
but you may not need inflammatory macrophages that are there to clean up a
mess and tend to create a mess as they're there in the lung tissue.
So, a lot of the work that we've done and others in the field have focused on
ways to manipulate that pathway. First off, trying to understand what's driving
the injury, and then, secondly, trying to understand what parts of the immune
response to the virus are actually detrimental versus beneficial.
Steph Dewar: So, I'm curious, John, you put a lot of energy and effort into the lung and what
happens there, and I love the analogy about the surface area, because it is
pretty impressive barrier to the outside world. Where did you come into this?
How does this happen? Where does someone like you end up doing what you're
John Alcorn: Right. I think that a lot of us start off where many students even today do.
They're in their undergraduate program, and they're trying to decide, do they
want to do research or do they want to go to medical school? Or, do they want
to do both, those special few MD, PhD folks that really think they can do that.
For me, it was early on and much more about fit, what fit my style, my learning
style. My approach to work and science fit better with the research aspect of
things. I actually did a master's degree first before I went to a PhD program to
kind of find that out. I went and did the job for a while to see if I liked it as
opposed to just default, "I'm going to go to medical school," like so many
students think, right?
For me, what evoked the passion was the highs, for me, were valuable enough. I
have this talk all the time with trainees about how, in basic science, there are an
incredible amount of lows. You're trying to discover something that has never
been shown before, and the odds are that your hypothesis is either wrong, or
it's correct, but you don't have the right tools or ability to really prove it.
The day-to-day of that job really requires a lot of beating your head against the
wall. You have to be the kind of person that is rewarded much greater by the
successes than the more numerous failures. For me, that's always been the
case. That one piece of data, when it happens, you get as high as you can get,
and that's what kind of keeps you moving forward. Going into this job, you
expect that it's going to be difficult, right? We're trying to unravel things that
have never been known, right? So, I think that's kind of the healthy approach for
Why the lung for me? That's always been an area interest in terms of function.
I've always kind of been interested in terms of large-scale organ systems. I think
for me early on it was kind of the lung or the heart, cardiovascular system, were
probably going to be my home. For me, I had a really good mentor when I
actually did enter the PhD program at Duke University with Jo Rae Wright, who
later went on to be the president of the American Thoracic Society. She was just
an excellent mentor in terms of kindling that interest and getting people excited
about research. At the time, I was one of six graduate students in her
laboratory, so she was very dedicated to training young scientists. That's
something I try to do now.
Steph Dewar: So, it sounds like you're not a native of Pittsburgh. What brought you to this
John Alcorn: Well, kind of. So, I actually grew up about two hours from here up in the middle
of Pennsylvania, kind of rural Pennsylvania. But, yeah, I've been up and down
the east coast from North Carolina, and we were in Vermont for my postdoctoral training. For me, this has always kind of been a home city even though I
grew up in a rural area, and my family also, my wife has family nearby as well,
So, there were geographical interests, for sure, but really what got me excited
about coming here was the division chief at the time in Pulmonary medicine was
Jay Kolls. Jay was at the forefront of the field for IL-17 and Th17 biology, and
these cells had just come out in the last six months of my post-doc, so this was
hot, exciting science to do.
Steph Dewar: And you had mentioned that you were involved with cystic fibrosis research
previously, and that translates reasonably well?
John Alcorn: Sure. Yeah, so, CF research, what I was doing 20 years ago, was kind of what
everyone was doing at the time, studying pseudomonas and understanding
interactions with the host. What's actually very applicable now, is that I'm
actually part of the executive committee of the CF Center here at Children's, so
it's something that I'm still involved in, is that the pathogens I work on, flu, for
example, is a very important exacerbating pathogen in CF, the bacteria we study
So, we're very interested in things like viral bacterial secondary interactions,
because a lot of infections aren't just one pathogen, especially in children. So,
the bugs we work on are MRSA or staphylococcus, and MRSA is generally a
colonizing bacteria in CF. It actually is the earlier life colonizing bacteria in most
CF patients that eventually tends to kind of wane and be replaced by
So, a lot of the pathogens we work on in the acute setting are relevant in terms
of the chronic disease and CF, and we constantly are trying to bridge the
knowledge that we gain from acute models in animals with something that we
really can't model in animals well, which is chronic infection. The mice are very,
very good at killing human pathogens, as it turns out.
John Williams: Well, you've really hit on a couple of key things here, John. It's just a beautiful
description of the joy of discovery, even though that doesn't come all that often
in science, when it does come, and serendipity. Pasteur said, "Chance favors the
prepared mind." So, I think there's often an element of chance there. I think the
points you made about flu are really important. Obviously the best way to
prevent severe flu is for people to get a flu shot, but the flu shot's not always a
great match every year, and that pandemic in 2009-2010, that was the fourth
one in that century. We'll probably, within 100 years, we'll have more, surely, in
So, do you think your research is moving towards ways to modulate the host, or
do you think if we had better virus tools that could help? There's kind of
different ways that you could take that.
John Alcorn: Yeah. Yeah, so influenza is a really smart little virus. It doesn't have a whole lot
of genes in it to shuffle around, but it's really good at changing them. A lot of
thought, at least, if we believe the classical thought from the CDC, that this virus
has been around for potentially hundreds to thousands of years. We know for
sure at least the last 150 years that we've had flu around. I think that we're kind
of taking a two-fold approach. My previous research, and what we mainly are
focused on, is certainly host modulation. So, once the kid is sick, how do we fix
But I think something we've done in the last year or two, we've gotten very
involved in vaccine efficacy trials through the CDC. This is happening in
collaboration with the folks over in Family Medicine that run these studies in
both children and in the elderly. What my laboratory actually does is we collect
all of the blood samples that come from these patients before vaccination and
then after vaccination at different time points.
Oddly enough, what's really missing in the vaccination study literature are
studies focused on T cells. Most of the time when we look at vaccines, whether
they work or not, what is measured is antibody response. But, as it turns out,
antibody response is a poor predictor of protection, particularly in elderly
patients. Nobody really understands fully why. It might be the quality of
antibody is a problem, or something along those lines. So, there's a niche there
available for kind of cell-mediated immunity studies in terms of that.
So, one of the things we've been trying to really push is, can we leverage the
ability of our hospital to collect these samples and to ... ability to generate data
to drive these universal flu vaccine progress that's happening in the field? I think
there's a lot of focus at the NAH in terms of dollars being put into the universal
flu vaccine. There's a lot in the literature in terms of a suggestion that there are
conserved epitopes in the virus that we might be able to use. We might come
up with a better flu vaccine, initially, probably, something you would still get
every year, but it might be broader specificity.
We still don't fully understand why people who are vaccinated don't get
protection, really, though. That's one of the problems always in vaccine
research, is how do you determine efficacy? We can't just come back and
challenge the person with the virus and see if they got sick or not, right? So,
oddly enough, when you look at children, about 50% of kids get vaccinated, and
efficacy is about 50%. So, what in the world in half of those kids is causing this
loss of efficacy? It really isn't known. There's really not a good immunologic
reason why it shouldn't work. Kids have lots of naïve T cells, and lots of cells that
could be primed, or B cells to make antibody.
So, I think that there's a current focus in this area, and I think prevention, like
anything else, if we could ever quite hit it, it would be the optimal goal.
Steph Dewar: So, that's interesting. Do you see a similar efficacy in the older folks? You said
50% of children are vaccinated and 50% protected, I think, is what you said, 50%
John Alcorn: Yeah, I think it's actually a little bit lower in terms of efficacy in the elderly.
There's a lot of confounders in terms of studying elderly vaccine responses. One
of those is pre-existing immunity. I think this is a major issue. A lifetime of flu
exposure, and also a lifetime of vaccination, really can change your ability of
your immune system to respond to a new vaccine. There's this concept of
original antigenic sin in humans that actually is being tested quite largely now
with birth cohort type studies, but the idea being that, when you were born, the
first flu virus that you are exposed to, you will bias your immune response
towards that strain of virus.
So, people that were born before World War II had seen H1N1 exclusively, so
when this pandemic virus came around in 2009, there actually was less severity
in older patients than in younger patients. Whereas, somebody born in the 70s
like I was, it was more exposed to H3N2, so we probably have a push in our
immune system to be more protected against H3 and less against H1, which also
fits with what happened in the pandemic. People in their 40s, a lot of people
suffered, previously healthy people.
John Williams: Well, and another thing just on that point you just made, John, is that we're not
very good at measuring protection against very severe disease. Those numbers
are protection against getting the flu, but if you kind of turn that on its head and
look at the children who die each year in this country of flu, of which there are
several hundred each year, almost all of them were unvaccinated and were
previously healthy. So, I think although protection against getting sick from the
flu, the vaccine is not great against that, although it's better than nothing, it's
probably pretty good at protecting against very severe disease.
John Alcorn: Yeah, absolutely. I would agree with that, too. And that's another thing where
we don't have an endpoint. How do you measure that protection versus severity
versus mild? The other confounder, too, really, with flu vaccination or flu
severity is the fact that genetic studies haven't really shown much promise.
People have been looking for a longtime for susceptibility genes in flu like you
might in other diseases, and very few have been identified, and those that have
been identified often don't reproduce in other cohorts. So, while genetics likely
do play a role, it's likely multifactorial or more complex than our ability to
Steph Dewar: So, it sounds like what we're left with is to continue to recommend universal
immunization against influenza.
John Alcorn: Mm-hmm (affirmative).
Steph Dewar: Well, John, thank you so much for joining us today. I've learned a lot more about
T cells and immunity and the work that you're doing, and I appreciate knowing
that you're here on this team.
John Alcorn: Thanks for having me.
John Williams: And thanks again for joining us, John. Thanks to all of our listeners. You can find
other episodes of That's Pediatrics on iTunes, Google Play Music, and YouTube.
Be sure to subscribe to keep up with new content. Leave a review and tell us
what other topics you'd like our experts to cover. Thanks for listening.
Children's Hospital's main campus is located in the Lawrenceville neighborhood. Our main hospital address is:
UPMC Children’s Hospital of Pittsburgh
One Children’s Hospital Way
4401 Penn Ave.
Pittsburgh, PA 15224
In addition to the main hospital, Children's has many convenient locations in other neighborhoods throughout the greater Pittsburgh region.
With myCHP, you can request appointments, review test results, and more.
For questions about a hospital bill call:
To pay your bill online, please visit UPMC's online bill payment system.
Interested in giving to Children's Hospital? Support the hospital by making a donation online, joining our Heroes in Healing monthly donor program, or visiting our site to learn about the other ways you can give back.